FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004196549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34155298
Sequences flagged as poor quality0
Sequence length50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTAT11263663.297778283181719TruSeq Adapter, Index 6 (97% over 36bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1190720.34861941476839114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)