FastQCFastQC Report
Wed 1 May 2024
EGAF00004196569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37782658
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTAT2379040.6296645408059962TruSeq Adapter, Index 3 (97% over 36bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA792790.20982907025757688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)