FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004196603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32222908
Sequences flagged as poor quality0
Sequence length150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGG3038430.9429409660977837No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1580030.49034370206438227No Hit
CCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCT1044510.32415137702655517No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG732040.2271799925692616No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG467730.14515449691877594No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG447090.13874911600157255No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA430420.13357577782861807No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT416140.1291441480079948No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG407100.126338690474491No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT376850.11695095923682616No Hit
GCTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCG325750.1010926760551841No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)