FastQCFastQC Report
Mon 4 Sep 2023
EGAF00004196606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38486918
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT4556091.1838022467790223No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT2510370.6522657906772373No Hit
GGGGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1645940.4276621993998065No Hit
CCGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT1279540.33246101961191077No Hit
GCGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT723730.1880457146503651No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA589800.1532468772895767No Hit
CGGGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG555860.14442829638891844No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT544390.14144806294959758No Hit
GGGGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGC515810.13402216306330375No Hit
GGGGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAAT499220.12971160746100793No Hit
GGGGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCCTCGCTGCGATCTA466400.12118403453350046No Hit
GGGGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCA422220.10970480930689228No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)