FastQCFastQC Report
Tue 19 Sep 2023
EGAF00004196611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36402646
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1014220.27861161521060857No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT790870.21725618516851766No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG617030.16950141481473627No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG597710.1641941083074016No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG541480.14874742896436705No Hit
GGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGG538230.1478546367206384No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA375870.10325348327701234No Hit
TCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAG369630.10153932216905331No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)