FastQCFastQC Report
Thu 23 Mar 2023
EGAF00004196613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53406209
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1967670.36843468893289166No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG1899480.35566651061115384No Hit
GGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGG1542340.2887941362773006No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1085900.20332841823691325No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1000240.1872890846830188No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA961920.18011388900492825No Hit
GTTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG941840.17635402655148205No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT898960.16832499756723043No Hit
CCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCT840110.15730567956995412No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG833850.15613353121544352No Hit
GCTCTGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG561220.10508515966748361No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)