FastQCFastQC Report
Thu 9 Feb 2023
EGAF00004196618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82361579
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT8108800.9845367340516868No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT4725190.573712895912304No Hit
CCGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT3219960.39095413651552263No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA3066580.372331375531302No Hit
GCGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT2593140.3148482619547641No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT2275030.27622467024339104No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT1748470.2122919474382588No Hit
CGGACGGTCCCCCGCGAGGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGG1048980.12736278404764434No Hit
CGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT885050.10745908598959715No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)