FastQCFastQC Report
Mon 18 Sep 2023
EGAF00004196622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33080563
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT2683080.8110744669006994No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT1579930.4776006986338171No Hit
CCGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT1083430.3275125637976597No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA951250.2875555654841787No Hit
GCGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT859230.2597386265765791No Hit
CGGACGGTCCCCCGCGAGGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGG772020.23337571370837915No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT711720.21514748706060413No Hit
GCCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT551250.166638639130779No Hit
GGGACGGTCCCCCGCGAGGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGG513090.15510316435666466No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)