EGAF00004198249 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004198249
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283284460
Sequences flagged as poor quality	0
Sequence length	150
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	547705	0.0	7.0664988	140-144
AGATCGG	584380	0.0	6.930007	140-144
ATCGGAA	532250	0.0	6.9029794	140-144
TCGGAAG	512465	0.0	6.796374	140-144
CGGAAGA	500725	0.0	6.579037	140-144
ACACGTC	304775	0.0	6.542042	140-144
TAGATCG	145460	0.0	6.46757	140-144
CAAAAAT	1200985	0.0	6.347616	1
CGTCTGA	262970	0.0	6.347391	140-144
ACGTCTG	294315	0.0	6.0984626	140-144
CAGATCG	188020	0.0	6.062646	140-144
CCGATCG	16690	0.0	5.969739	140-144
CACGTCT	320610	0.0	5.9229817	140-144
GCACACG	390975	0.0	5.8918195	140-144
CACACGT	383545	0.0	5.6958785	140-144
ACCGATC	78535	0.0	5.573345	140-144
TCGCGTA	10345	0.0	5.1218033	140-144