FastQCFastQC Report
Wed 22 Feb 2023
EGAF00004198440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66732000
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1858910.27856350776239286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1454110.2179029551039981No Hit
AGAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCC1179280.17671881556075045No Hit
ACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCT883790.13243871006413716No Hit
ACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCCT828610.12416981358268897No Hit
GACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG784520.11756278846730205No Hit
GACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTG716460.10736378349217766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)