FastQCFastQC Report
Mon 18 Sep 2023
EGAF00004198464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29894220
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA1056880.3535399150738838No Hit
GAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC677080.22649194392762212No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN532160.17801434524801116No Hit
GAGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACC510730.17084573539634082No Hit
GACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG464750.1554648356772647No Hit
GAGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTG386410.1292591009231885No Hit
GACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC345100.11544037609946002No Hit
GACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCC330100.11042268371611635No Hit
GACCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG308920.1033377020708351No Hit
GAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAA306670.10258504821333354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)