FastQCFastQC Report
Thu 23 Feb 2023
EGAF00004198539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83773835
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAAGTGCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATC1463910.17474549183524904No Hit
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGG1120880.1337983393024803No Hit
CTGGGCAGAGCCGTGGCTCAGGTCGAAGTGCGGGAAGTAGGTCTTGGTGG1057440.12622556911713545No Hit
GTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGGCCTCCGCACC1051620.12553084146141813No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1040070.12415212936115434No Hit
GGGCATGTCGTCCACGTGCGCCACGGCGTTGGTCAGCGCGTCGGCCACCT978050.11674886317428346No Hit
CACCAACTTCATCCACGTTCACCTTGCCCCACAGGGCAGTAACGGCAGAC929380.11093917331109408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)