FastQCFastQC Report
Tue 4 Apr 2023
EGAF00004198548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44307022
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATG2533390.5717806987795298No Hit
AGAAGACCTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCC1853650.4183648361652471No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1518790.34278765113123605No Hit
TGGGCTTTGGGAAGATCTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAA626870.14148321681380435No Hit
CTAAAGACCCAGGAAGGTCTCTGGGTGGGATAAAGCCAAGATGAAACTCC507020.11443332842365259No Hit
CTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAG496360.11202738924769082No Hit
GAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATCTG456590.10305138539891037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)