FastQCFastQC Report
Mon 3 Apr 2023
EGAF00004198578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38289684
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN662120.17292386116323133No Hit
ATGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAA577100.15071944704479673No Hit
ATCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA488090.12747297679448072No Hit
ATGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGA438980.11464706786297844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)