FastQCFastQC Report
Wed 20 Sep 2023
EGAF00004198590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39953052
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA8038922.0120915919014144No Hit
CACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG2958030.7403764798744286No Hit
CACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG2893250.7241624494669393No Hit
CAGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTG2637870.6602424265360254No Hit
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC2617760.6552090188253954No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC2526970.6324848474654702No Hit
CAAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAG2006120.5021193374663843No Hit
CACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC1903460.4764241790589615No Hit
CACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCC1836810.45974209930195076No Hit
CAGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACC1836790.4597370934265548No Hit
CAGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAG1494860.37415414471965747No Hit
CAACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC1163820.29129689516585616No Hit
CAACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCT1115500.27920270020923554No Hit
CAGGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTC1070890.2680370951385641No Hit
CACTCAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAAGTCTGCCG1049900.26278342891051226No Hit
CAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAAGTC982480.24590862295075733No Hit
CATGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCT889650.22267385230044504No Hit
CACAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC716880.17943059769251168No Hit
CAAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAAGT656700.16436791862609143No Hit
CAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAA618160.1547215967380915No Hit
CACCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG604060.15119245458394517No Hit
CAGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG597240.14948545107392547No Hit
CACTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTG528980.1324003983475405No Hit
CAAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACT523250.1309662150466002No Hit
CAGTCAACTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCC512720.12833062165063133No Hit
CAGTCAAGGCCGCCTGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGT509770.1275922550297284No Hit
CACAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAAGTCTGCCGTT474210.11869180857572532No Hit
CACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAA460450.1152477663033102No Hit
CAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAA444570.11127310123892412No Hit
CACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAAGTCTGCC443270.11094771933818723No Hit
CATGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGA432300.10820199668350743No Hit
CAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAGTTGG421870.10559143266451834No Hit
CAGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGG417710.10455021058216028No Hit
CACACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTG408880.10234011659484736No Hit
CACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCC407930.10210233751353966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)