FastQCFastQC Report
Mon 6 Mar 2023
EGAF00004198596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79425361
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA5570330.7013288866260237No Hit
CGCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAG2513690.3164845545996322No Hit
CGCAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC2023820.25480778110659136No Hit
CGCAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGAC1949560.24545812262660033No Hit
CGACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC1701780.21426153794881714No Hit
CGACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTC1666400.20980704135546832No Hit
CGCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG1428410.17984306045521153No Hit
CGCTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCC1332090.16771595158377686No Hit
CGCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTG1330010.1674540704951911No Hit
CGCTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCATCTGACTCC1270670.1599829052083251No Hit
CGCTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACG1124260.14154924646801414No Hit
CGCAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC992300.12493490586715746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)