FastQCFastQC Report
Sat 16 Sep 2023
EGAF00004198611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44054198
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGA1415360.3212769870421883No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1064020.2415252230899766No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT783290.17780144357638744No Hit
CTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGC536180.12170917286929159No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG502930.11416165151843191No Hit
CCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGTC452250.1026576400278584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)