FastQCFastQC Report
Tue 4 Apr 2023
EGAF00004198616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45784820
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTT5007611.0937271348888125No Hit
TTCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTA3039430.6638510318485472No Hit
TTCTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAATG2391390.5223106697809449No Hit
TTCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTC996090.21755900754879018No Hit
TTGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATC937870.20484300254975338No Hit
TTCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAA899160.19638823522730897No Hit
TTCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGA807470.17636194703834152No Hit
TTGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAAT670760.1465027054818606No Hit
TTGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCT643660.14058371311714232No Hit
TTGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAG567770.12400835036590731No Hit
TTACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAATTAAT551910.1205443201480316No Hit
TTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAA522260.1140683746272236No Hit
TTCACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTG520400.11366212644278169No Hit
TTACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC476430.10405850672777571No Hit
TTCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA462040.10091554362341056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)