FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004198655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004198655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5988677
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCT129840.2168091550103637No Hit
GCCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGC110210.18403062980354426No Hit
GGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCTCT101310.169169250570702No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN83750.13984724839893686No Hit
GGCAGCAAGGATGGCGAGGGTCCTCATGGCTGGGGTCACAGATCCTCTAG81330.13580628910191683No Hit
GGCGAGGGTCCTCATGGCTGGGGTCACAGATCCTCTAGCTAGGCAGGGTG73130.12211378239300599No Hit
GCCTGGAGTGGCTCAGCCTGGGCCTGCAGGGCCACCAGGAGAATGGCAGC70710.11807282309598598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)