FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004455686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36746667
Sequences flagged as poor quality0
Sequence length50-120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGCGTTGTCTCTGGAGATGGTGAATCGGCCCCTCACAGAGTCCACATA1163910.3167389303633987No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA847160.23054063651541512No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA841560.22901668877887618No Hit
GGAGGCAGCAGTAAGGAATATTGGTCAATGGACGCAAGTCTGAACCAGCC743700.20238570208285828No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC670140.18236756002932183No Hit
AGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGA562820.15316219019265068No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA438770.11940402649306943No Hit
ACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAA435340.11847060850443931No Hit
GGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAAC426650.11610576817756016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)