FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004455687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36746667
Sequences flagged as poor quality0
Sequence length50-120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGCGTTGTCTCTGGAGATGGTGAATCGGCCCCTCACAGAGTCCACATA1231680.3351814193107636No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA799520.2175761954138589No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA705030.19186229869500818No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC635290.17288370670461078No Hit
AGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGA468820.1275816389007471No Hit
ACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAA458050.12465076084315348No Hit
GGAGGCAGCAGTAAGGAATATTGGTCAATGGACGCAAGTCTGAACCAGCC445130.12113479570813863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)