FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004455707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2645505
Sequences flagged as poor quality0
Sequence length50-120
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTAC361371.365977384280128No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA261440.9882423204643349No Hit
CCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACT198910.7518791308275736No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA195330.7383467428713988No Hit
ACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTA105120.39735324635561076No Hit
GGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGC88780.33558810132658984No Hit
CAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTC73950.27953075121763143No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC61410.23212959340466188No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC56860.21493060871175823No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA56460.21341861005743706No Hit
GACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCT56150.2122468111003381No Hit
GAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCCCCAGCTCAGCT53260.20132262082286748No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG52860.19981062216854628No Hit
CCTCCTGTGCAAGAACATGAAGCACCTGTGGCTCTTCCTCCTGCTGGTGG50050.18918883162193986No Hit
ACCTCCTGTGCAAGAACATGAAGCACCTGTGGCTCTTCCTCCTGCTGGTG46320.17508944417039468No Hit
TAATAAACTGCAAAATCTTCAGGCTCTAGGCTGCTGATGGTGAGAGTGAA45460.1718386470636041No Hit
AATAAACTGCAAAATCTTCAGGCTCTAGGCTGCTGATGGTGAGAGTGAAG40940.1547530622697746No Hit
CTCCTGTGCAAGAACATGAAGCACCTGTGGCTCTTCCTCCTGCTGGTGGC38370.1450384709157609No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCC36240.1369870780815005No Hit
ATAATAAACTGCAAAATCTTCAGGCTCTAGGCTGCTGATGGTGAGAGTGA36200.1368358782160684No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC36000.1360798788889078No Hit
ATAAACTGCAAAATCTTCAGGCTCTAGGCTGCTGATGGTGAGAGTGAAGT34740.131317083127796No Hit
AGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTACTCT34130.1290112851799562No Hit
GGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCG29530.11162330065526242No Hit
TAGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGT29260.11060270156359561No Hit
GAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGG28990.10958210247192879No Hit
AGGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTC28110.10625570543242216No Hit
TAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTT27890.10542410617254551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)