FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004455708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4181343
Sequences flagged as poor quality0
Sequence length50-120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA341800.8174407122304963No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA181720.4345972095568338No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA167140.39972802996549195No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC130170.31131146141323496No Hit
TGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAG125740.3007167792740275No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC101120.24183617560195372No Hit
GTTCATTTTTCTTTGCATAATCCAGGGAATCATAAATCATGCCAAAGCCA90340.21605498520451444No Hit
CTAGGCAGAATAGTAATGAGGATGTAAGCCCGTGGGCGATTATGAGAATG82390.19704195518042886No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG70450.16848653650274564No Hit
GGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAG69880.16712333812366026No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCC65720.15717438153244065No Hit
GGAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCG52080.12455328347853788No Hit
ACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCT48560.11613493559365974No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC44070.1053967588882328No Hit
CAAAAGGAATCGTGCTGGAAAAAGTAGGAGTTGAAGCCAAACAGCCAAAT44050.10534892736615964No Hit
GAATAATGGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGG42700.10212029962622057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)