FastQCFastQC Report
Thu 5 Jan 2023
EGAF00004455711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27953035
Sequences flagged as poor quality0
Sequence length50-120
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCAGGGTATCTAATCCTGTTTGCTCCCCATGCTTTCGTACCTCAGCGT2662310.952422518699669No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA2136170.7641996656177048No Hit
GGCATGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCATGCTTTCGTA1880620.6727784657372625No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA909250.32527773817762545No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC854650.30574497545615353No Hit
CTCGGATGCGACGGCGCGGCTTTAAGGATTCAAGCTCGCGGCTCGGCGCT792260.28342539548925544No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA724500.25918473611183906No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA592370.2119161658116909No Hit
GAGGAGGAGGCTACCTAGATTAATACTTTAGGATAGTGGACGTTACTCGC576260.20615292758013573No Hit
ACATTTTGGGAGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCC528010.18889183231802917No Hit
TAGACCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAATGAATTGAC498620.17837776828169105No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC489930.17526898241997693No Hit
AATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCATAATGATGGCG471750.16876521637095937No Hit
GGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAA384020.13738043114101922No Hit
GCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAACGATG383720.1372731082689232No Hit
TGTCCACCGAGGCCTCCCAGAACATCACCTACCACTGCAAGAACAGCGTG365640.1308051165106043No Hit
TCGAAGGCAATTCTGTGGTTGAGCCACAGGCTTTCACCCCCGACTTAATC362380.12963887463382778No Hit
ACACGACGCTCCCCTACCCATCCACACACCTGCCAGAAAATCCTTGGATC343980.12305640514527313No Hit
CGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGA340460.12179715011268007No Hit
CGGGTGAGTAATGCTTAGGAATCTGCCTATTAGTGGGGGACAACGTTCCG329260.11779042955442941No Hit
TGTGGATAGGGGTGAAAGGCTAATCAAACTCGGTGATAGCTGGTTCTCCC313820.11226687907055531No Hit
TTGTAAAGCACTTTAAGCGAGGAGGAGGCTACCTAGATTAATACTTTAGG310130.11094680774377452No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG309190.11061052941120704No Hit
GGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAG301680.1079238801797372No Hit
CGGAGCGGGCCTCCGAGTACGTGGCCGAGGCCATGTTCGCCGCGCGTTCC294070.10520145665756868No Hit
ACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACG290770.10402090506451268No Hit
GCTAGTAGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT283530.10143084641792922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)