FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004455712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3678364
Sequences flagged as poor quality0
Sequence length50-120
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTAC210570.5724555807962453No Hit
ACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTA128030.34806234510777073No Hit
CCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACT97880.26609655814378347No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA77270.21006621421914745No Hit
CAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTC75510.20528147839637403No Hit
AGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTACTCT74360.20215508851217553No Hit
AGAGCTGCTCAGTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGC58830.159935232075999No Hit
TGCCCTTGGGTTCGGAATAACAGTTGGAAACGACTGCTAATACCGGATGA56780.15436210228242775No Hit
CCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTG53330.1449829326298322No Hit
GACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCT45200.1228807154484983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)