FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004455719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1811698
Sequences flagged as poor quality0
Sequence length50-120
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA87830.4847938232531029No Hit
TCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA64060.3535909406534643No Hit
TGCAAGTCGAGCGGGCATAGCAATATGTCAGCGGCAGACGGGTGAGTAAC54150.2988908747484404No Hit
CCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAGAAC47630.26290253673625513No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC42290.23342742554222615No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA37730.20825766766867326No Hit
TTGCCATGAGCCTTCACCTTAGGGTTGCCCATAACAGCATCAGGAGTGGA37270.20571861314634116No Hit
ATATCCCCCAGTTTAGTAGTTGGACTTAGGGAACAAAGGAACCTTTAATA37020.20433869221029113No Hit
CTTAACGGTATTTGGAGGTCAGCACGGTGCTCACAGAAGCCAGGAACTTG36990.2041731016979651No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC35890.1981014495793449No Hit
GCACGGTGCTCACAGAAGCCAGGAACTTGTCCAGGGAGGCGTGCACCGCA33310.1838606655193084No Hit
TCAAAGGCAGTTCTGGAGTTGAGCTCCAGGATTTCACCCCTGACTTAAAG32300.17828578493766623No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA29760.16426578822739774No Hit
TTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTG28170.1554894910741194No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC26750.14765154015735513No Hit
TTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTGGTGGCCA19160.10575714053887568No Hit
CAAAGGCAGTTCTGGAGTTGAGCTCCAGGATTTCACCCCTGACTTAAAGA18950.10459800695259364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)