FastQCFastQC Report
Sun 2 Apr 2023
EGAF00004455726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20136689
Sequences flagged as poor quality0
Sequence length50-120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA1255540.6235086612302548No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1212290.6020304529706945No Hit
AGCCCTCTCGCCTCCCTGCCTCACCGGGCAGGCCCTGGCTGGCGCACGTG712490.35382678850529997No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA549450.27286015094139854No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC502680.2496338896627941No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA433670.21536311158204807No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG415010.20609644415722964No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC389890.19362170215768837No Hit
AGTCAGTGGTGGCCTGAGCGGGGATGGCGACCGAGAAGGAGCTGATTGCT348590.1731118755422006No Hit
TGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAG341000.169342636219887No Hit
GGCTTGCCGATCTTGTTCCCCCAGTAGCCTCTGCGCACGGGGACGATGGA337400.16755485472313747No Hit
GATGGGCATTGGACAGAGGGACACTAGGGTCTTTGGTGACAAGGAGCAAT265680.13193827446011608No Hit
TCCCGGTAACGCTTCAGCACCTGGGCCAGGTCTGGCTCCTGCACCTCCAG250990.12464313274143529No Hit
GTTCCACACAAAGGCCGAGGTCCGGAGTTCAGGTTCCACGATTTAGAAGA238460.11842065992080425No Hit
CCCACGGTGATCACGCGGCGCCAACGATCAGACATATAACGCCTGCGACG232980.1156992591979744No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT232490.11545592227202794No Hit
GAGAACTCGCCCAGGTAGTGGCCGATCATCTCGGGCTTGATCTCCACCTG226470.11246635432468564No Hit
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA215270.1069043674459093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)