FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004455730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24565044
Sequences flagged as poor quality0
Sequence length50-120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA2293640.9337007497320176No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1056950.43026586885006196No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA927910.37773594055032017No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC719490.2928918018628422No Hit
CGGCTGCAGCTGCTGCTGCTGAGCCGCCCCCTTTCTCGGGCCCAGCCACA690600.2811311878781898No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC520670.2119556553613338No Hit
TTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTG429530.17485415454578465No Hit
TTCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTTGTGGCTCTTG410080.16693639954400244No Hit
CCGAGGGAAGCAAGACATCGGGGACATTCTGCAGCAGATAATGACCATCA349520.14228348217084408No Hit
AAGGCTCGGTGGCTGCTGCGGTCCCAGACCCTTCACCGGCCCTTGGGACC338580.1378299994089162No Hit
TGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGA325740.1326030598601818No Hit
AGAAAGTGATGTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCA302890.12330122429253536No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC287770.11714613659963319No Hit
TACCAGGGTATCTAATCCTGTTTGCTCCCCATGCTTTCGTACCTCAGCGT281350.11453266682526601No Hit
ATTCCAAGCCACTTGGGTCAGAGGCTATAGATAATCAAGGCTAGGCTAGC269760.10981458042574645No Hit
TGATCGCTGAAGCGGTTGAACGTGAACAGCCTGAACATTTGCGCAGCTGG258100.10506799824987084No Hit
ACTCCACCTTACTACCAGACAACCTTAGCTAAACCATTTACCCAAATAAA253890.1033541808433154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)