FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004455733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13073543
Sequences flagged as poor quality0
Sequence length50-120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTACACATTTAAAGTTTGAGAATAGGTTAAGGATGTTACATCCCCAAG732830.5605442992767914No Hit
CCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTG384210.2938836090568563No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC264310.2021716683840027No Hit
CATGTGTGCGAGTTTTTGGGTGGCAAACCCATGAGCGTAATGAAAGTGAA261620.200114077721701No Hit
GTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAA242420.1854279287565735No Hit
TAGACCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAATGAATTGAC239880.18348507363306182No Hit
GCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAACGATG216900.16590758909042486No Hit
CGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACC189000.14456677887547392No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG179570.1373537380035389No Hit
ACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAG167330.1279913180382701No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA164670.1259566744837264No Hit
TGAGCCTAAATCAGATTAGCTAGTTGGTGGGGTAAAGGCCCACCAAGGCG155250.11875128264771072No Hit
TACCAGGGTATCTAATCCTGTTTGCTCCCCATGCTTTCGTACCTCAGCGT153630.11751213882877809No Hit
GGCTCAGAGCGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGAA147310.11267794812775694No Hit
AGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAAGCA142860.10927412714365188No Hit
AGAAAGTGGTGTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCA135390.10356029731190695No Hit
GCTAGTAGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT134660.10300191768979534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)