FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004455735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37590272
Sequences flagged as poor quality0
Sequence length50-120
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAA2119110.5637389375634206No Hit
TTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCT1285840.34206722420098473No Hit
ATCTAAGTACCCGTAGGAAAGGACATCAACCGAGACTCCGCAAGTAGTGG1062100.28254650564912115No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA973080.2588648467348148No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA938090.24955658740644387No Hit
TCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTG780890.20773725712865285No Hit
GACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGAT759380.2020150319742299No Hit
CCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTG749710.19944255790434293No Hit
CCAGCGAGCCGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGAT540500.1437872011141606No Hit
CATCTAAGTACCCGTAGGAAAGGACATCAACCGAGACTCCGCAAGTAGTG505750.1345427880915573No Hit
GGATACAGCTTTGCTCCTCCAGAGCCAAAATACATAGGATGTGGCTGAGA460150.12241198999570953No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA448790.11938993152270885No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC435450.11584114102712532No Hit
GACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGC419330.11155279748973353No Hit
TACTCTACCTGACCACCAGTGTCGGTTTCGGGTACGGTCTATAAGTGGGA415980.11066160947172715No Hit
CTTGTTGGTTTGAACAAGCAAAATGTCTGCATGGTATCTCGGCTCCGCAA401750.10687605559225537No Hit
AGAAGGCACGCTGATATGTAGGTGAAGTCCCTTGCGGATGGAGCTGAAAT395550.10522669269325852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)