FastQCFastQC Report
Wed 14 Sep 2022
EGAF00004455740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17941961
Sequences flagged as poor quality0
Sequence length50-120
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1355970.7557535098866841No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA847380.47228951172059735No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG527920.2942376254189829No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC409510.2282414948956806No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC363980.20286522749659303No Hit
ACTCCACCTTACTACCAGACAACCTTAGCTAAACCATTTACCCAAATAAA335010.1867187204341822No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCC312840.17436221157765308No Hit
TCGAAGGCAATTCCGTGGTTGAGCCACGGGCTTTCACCCCCAACTTACAA311620.17368224131130372No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC311590.17366552073098362No Hit
TGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATG246560.1374208761238529No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG203420.11337668162359733No Hit
CGGTAATGCTGGTGGTCTGCATCACCACCGGATCAACTTCGACAAATACC192670.10738514034224018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)