FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004455741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17941961
Sequences flagged as poor quality0
Sequence length50-120
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA814260.453829991047244No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA616570.34364694026477927No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG494350.27552729604082854No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC372670.20770862226263898No Hit
ACTCCACCTTACTACCAGACAACCTTAGCTAAACCATTTACCCAAATAAA372150.20741879887042447No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC364200.20298784508560688No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA358890.2000283023689551No Hit
TCGAAGGCAATTCCGTGGTTGAGCCACGGGCTTTCACCCCCAACTTACAA324770.18101142901826617No Hit
TGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATG255740.14253737370179326No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC245830.13701400866939797No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG224800.12529288186503137No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT199300.11108038859297487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)