FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004455746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16220877
Sequences flagged as poor quality0
Sequence length50-120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA2021111.2459930495743232No Hit
TCAAAGGCAATTCCGAGGTTGAGCCCCGGGATTTCACCCCTGACTTAAAT1097450.6765663780077982No Hit
GGCTCAGAGCGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGAA637310.39289490944293576No Hit
GATATTCGGAAGAACACCAGTGGCGAAGGCGACACACTGGCTCATTACTG490310.3022709561264782No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA461810.28470100599369563No Hit
CTCTAAGCCTAAATACTCGTATGCGACCGATAGTGAACTAGTACCGTGAG419340.2585186978484579No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA336130.20722060835551614No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG290050.17881277319345926No Hit
AATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCC262480.16181615827553592No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT256350.1580370777732918No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC251250.15489298143374122No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC234790.14474556462021135No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA221360.1364661109260615No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA206200.12712013043437786No Hit
TGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATG192700.11879752247674401No Hit
CTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGG188160.11599866024506567No Hit
CCGGGGGTAATGCTGGCTCGCAGTTTTCTCACGTGCTGACTGAAGGGTTT174990.10787949381528508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)