FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004455747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16220877
Sequences flagged as poor quality0
Sequence length50-120
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAAGGCAATTCCGAGGTTGAGCCCCGGGATTTCACCCCTGACTTAAAT1110300.684488267804509No Hit
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA1028390.6339916146334135No Hit
GGCTCAGAGCGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGAA452370.27888134531813535No Hit
ACCTGAGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCCTAAC329670.20323808632541876No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA320530.19760337249336146No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT306120.18871975911043526No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG249020.15351820989703577No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG229900.14173093107111284No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC228410.1408123617483814No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA203870.1256837099498381No Hit
CTCTAAGCCTAAATACTCGTATGCGACCGATAGTGAACTAGTACCGTGAG202170.12463567783665458No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA201900.12446922567750189No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA199100.12274305513814081No Hit
TGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATG188780.11638088372163849No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC177380.10935290366852544No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA176450.10877956845366622No Hit
AATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCC174590.10763289802394778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)