FastQCFastQC Report
Sat 13 May 2023
EGAF00004455750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26795923
Sequences flagged as poor quality0
Sequence length50-120
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA2573950.9605752337771682No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA2086370.7786147168731602No Hit
TGTGATTTCCAATTCGGAGCATTTTGTACCTCTCTGCACTCTTCATATGT801920.29926940751397146No Hit
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA546050.20378100056489937No Hit
GCCTGCAGCCTGTACTCGCGCTCCTGCAGGATCTCCACAGGGTCGAGGCC376110.14036090490333175No Hit
TCACCTGCCTCGACTTCCCAAAGTGCGGGGATTATAGGTGTGAGCTGCCA351040.13100500400751264No Hit
GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTA291830.1089083589320659No Hit
TAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAG287870.10743052217309326No Hit
CACCAACCGGGGCCCCAGGCTCCGCCCCTCACATCCTGTGCCCGGTTTCC278780.10403821506726975No Hit
TTAAGGACCCTTTGGCAATTGGCAGTGATATTTTGAGAGCCTTTGAGGAA277090.10340752210700112No Hit
ATTCACTTTGTGCTCACTCCGGCAAAACCTCCCTGTGTTGACAATCTTGG268120.10005999793326768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)