FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004455754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2955633
Sequences flagged as poor quality0
Sequence length50-120
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA287340.972177533543576No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA191900.6492687014930473No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC155590.5264185370781825No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC85150.28809395483133393No Hit
TTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTG71540.24204628923821056No Hit
TGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAG69400.23480587745501555No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC57550.19471294304807127No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG55570.1880138704636198No Hit
TAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTT51270.17346537949738686No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC46820.15840938303233182No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG45980.15556735223892817No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT45030.15235315074638836No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCC44410.15025546135125709No Hit
TTTTTCACCCAAGAAATTTCGGATTTCAACAAGAGACCCATTCTCCTGGA43070.14572174556177983No Hit
CTAGGCAGAATAGTAATGAGGATGTAAGTCCGTGGGCGATTATGAGAATG39410.13333861139052108No Hit
ACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAA37890.12819588900245735No Hit
GTTCATTTTTCTTTGCATAATCCAGGGAATCATAAATCATGCCAAAGCCA37550.1270455432051273No Hit
TGATGAAGGTTGGTGAGGCCAACCCAAAGCTGCAGAAAGTACTTGATGCC36180.12241032631588562No Hit
GATATATGGAGGAACACCGGTGGCGAAAGCGGCTCTCTGGTCTGTAACTG35350.11960212922240344No Hit
CCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTG29940.10129809756488711No Hit
TTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTGGTGGCCA29640.10028308656724295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)