FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004455763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2312398
Sequences flagged as poor quality0
Sequence length50-120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA48060.20783619428835345No Hit
GTAAGAGATAAACACGCCGCGTGAACGGCGGTAGATCTCAGAAAAACGCT41080.17765107909624556No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA38580.16683979141998911No Hit
CCTTACGCTGGCCCTGTACTGCTGGAATTTCCGTTGTTGAATAAAGGCAG37800.16346666966499712No Hit
TGCAAGTCGAGCGGGCGTAGCAATACGTCAGCGGCAGACGGGTGAGTAAC37670.16290448270583177No Hit
GGTAAGAGATAAACACGCCGCGTGAACGGCGGTAGATCTCAGAAAAACGC29520.12765968488123583No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC29290.12666504641502024No Hit
CTTACGCTGGCCCTGTACTGCTGGAATTTCCGTTGTTGAATAAAGGCAGT25650.1109238115583909No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC23850.10313968443148627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)