FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004455764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6608304
Sequences flagged as poor quality0
Sequence length50-120
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT307180.46483938995542584No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA303880.4598456729593554No Hit
TGCAAGTCGAGCGGGCATAGCAATATGTCAGCGGCAGACGGGTGAGTAAC234650.3550835433720967No Hit
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA217290.32881356547761725No Hit
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA128730.19480036027398256No Hit
TCAAAGGCAGTTCTGGAGTTGAGCTCCAGGATTTCACCCCTGACTTAAAG111960.16942319844849754No Hit
AGTGGGCGCAGCGTAGCGATCGGGCCCTGCGGCCAGCAGCCGGGGTTGGC77960.11797278091322674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)