FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004455766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37113618
Sequences flagged as poor quality0
Sequence length50-120
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA2167540.5840282130402915No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1926280.5190224245989706No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG1154910.3111822727711429No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC1030140.27756388504079554No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC788720.2125149857391969No Hit
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA710660.1914822747811868No Hit
TGCAAGTCGAGCGGGCATAGCAATATGTCAGCGGCAGACGGGTGAGTAAC614470.1655645644679535No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG611200.16468348626102688No Hit
TGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATG576860.15543081787391355No Hit
TGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAG558630.15051887423101679No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA480060.12934874740587132No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCC473860.1276782015701083No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT399380.10761009611081301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)