FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004455768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4225346
Sequences flagged as poor quality0
Sequence length50-120
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA186530.44145497197152617No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG92520.21896431676837824No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA92040.21782831512496253No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC90360.21385230937300756No Hit
ACTCCACCTTACTACCAGACAACCTTAGCTAAACCATTTACCCAAATAAA78320.18535760148399683No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC68730.16266123531658708No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC55360.13101885620727866No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCC50280.1189961721477957No Hit
GATATCAGGAGGAACACCAGTGGCGAAGGCGGTTCTCTGGGCCTTTCCTG46430.10988449229956553No Hit
CCAGCGAGCCGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGAT45580.10787282272268353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)