FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004455772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3045241
Sequences flagged as poor quality0
Sequence length50-120
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCT211170.6934426536356236No Hit
AGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTG205780.6757429050771351No Hit
ATGCAGTCAGCAATGACTTAAATTAGTCAGGATAGCAGGCATCTGGGGTT197180.6475021188799178No Hit
GCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGCA140990.4629847030169369No Hit
GGGATCTCAGGGCTTCATTTTCTGTCCTCCACCATCATGGGGTCAACCGC112150.3682795548858038No Hit
CAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCT94930.31173230624439907No Hit
TGCAGTCAGCAATGACTTAAATTAGTCAGGATAGCAGGCATCTGGGGTTA85930.28217799510777636No Hit
CATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGC75890.2492085191286995No Hit
GAAGAACCATTTGCTTTTCTGGGGAGTCCTGGCGGTTTTTATTAAGGCTG61200.20096931572903426No Hit
CAGTCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCT60820.19972146703659907No Hit
TCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGG53990.17729302869625096No Hit
TGGGATCTCAGGGCTTCATTTTCTGTCCTCCACCATCATGGGGTCAACCG52630.17282704390227244No Hit
CTGAAGAGTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACA43830.14392949523535245No Hit
ACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTC43570.14307570402473893No Hit
CTGGGATCTCAGGGCTTCATTTTCTGTCCTCCACCATCATGGGGTCAACC38630.1268536710230816No Hit
TTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAGGTGCTGG38540.12655812791171536No Hit
GAAGACAGATGGTGCAGCCACAGTTCGCTTGATCTCAACCCTGGTCCCTC37370.1227160674639544No Hit
AGACAGATGGTGCAGCCACAGTTCGCTTGATCTCAACCCTGGTCCCTCCG36700.12051591319045028No Hit
TGAAGACAGATGGTGCAGCCACAGTTCGCTTGATCTCAACCCTGGTCCCT36390.11949793136241105No Hit
GGTTTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAGGTGC33770.11089434300930534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)