FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004455773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3045241
Sequences flagged as poor quality0
Sequence length50-120
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGCT195960.6434958678147312No Hit
AGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTG195520.6420509903813852No Hit
ATGCAGTCAGCAATGACTTAAATTAGTCAGGATAGCAGGCATCTGGGGTT179050.5879666010013657No Hit
GCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGCA104210.34220608483860554No Hit
GGGATCTCAGGGCTTCATTTTCTGTCCTCCACCATCATGGGGTCAACCGC98470.32335700195813727No Hit
CAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCT89690.29452512953818766No Hit
CATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTCTGGC72850.23922572958921806No Hit
TGCAGTCAGCAATGACTTAAATTAGTCAGGATAGCAGGCATCTGGGGTTA71220.23387311546114084No Hit
GAAGAACCATTTGCTTTTCTGGGGAGTCCTGGCGGTTTTTATTAAGGCTG58810.19312100421608666No Hit
TGGGATCTCAGGGCTTCATTTTCTGTCCTCCACCATCATGGGGTCAACCG51340.16859092597268985No Hit
ACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTGCTC42000.13792011863757253No Hit
CAGTCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCT38880.12767462411021No Hit
TCCCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGG36970.12140254252454895No Hit
CTGGGATCTCAGGGCTTCATTTTCTGTCCTCCACCATCATGGGGTCAACC35600.11690371960708529No Hit
TGAAGACAGATGGTGCAGCCACAGTTCGCTTGATCTCAACCCTGGTCCCT33940.11145259110855266No Hit
GAAGACAGATGGTGCAGCCACAGTTCGCTTGATCTCAACCCTGGTCCCTC33770.11089434300930534No Hit
AGACAGATGGTGCAGCCACAGTTCGCTTGATCTCAACCCTGGTCCCTCCG32580.1069866063145741No Hit
TTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAGGTGCTGG32540.10685525382063357No Hit
GGTTTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAGGTGC31880.10468793767061457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)