FastQCFastQC Report
Sat 13 May 2023
EGAF00004455775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33949771
Sequences flagged as poor quality0
Sequence length50-120
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTG2464790.7260107881140052No Hit
CATAAGCTTTGCTTCTAATGAAACCTACCCACTCCAGCCCCTTCCCTGGA2239550.6596657161546098No Hit
AAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGC947450.27907404736249913No Hit
TGGAGACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGC803240.23659658853074444No Hit
CTCTGGGAGAGGAGCCCCAGCCGTGAGATTCCCAGGAGTTTCCACTTGGT632940.18643424722953214No Hit
CTCTGCTTCAGCTGTGAGCGCAGAAGGCAGGACTCGGGACAATCTTCATC564950.16640760257263593No Hit
AGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGG538530.15862551768022234No Hit
TCTGGGAGAGGAGCCCCAGCCGTGAGATTCCCAGGAGTTTCCACTTGGTG491840.14487284759593813No Hit
CGCAGAAGGCAGGACTCGGGACAATCTTCATCATGACCTGCTCCCCTCTC464080.136696061955764No Hit
CTGCTCGTGGTGTACAGGTCCCCGGAGGCATCCTGGCTAGGTGGGAAGTT459720.13541181176155798No Hit
AGCCGTGAGATTCCCAGGAGTTTCCACTTGGTGATCAGCACTGAACACAG442230.13026008334489206No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG422590.12447506641502824No Hit
CTACACGAATCCCAGCCAGGATGTGACTGTGCCCTGCCCAGTTCCCCCAC402300.11849859016722086No Hit
TTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTG340290.10023337123540538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)