FastQCFastQC Report
Wed 14 Sep 2022
EGAF00004455779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19688230
Sequences flagged as poor quality0
Sequence length50-120
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1327810.6744181676057218No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA844020.42869267577633946No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG613700.3117090769459723No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC439260.22310791777625516No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA419280.2129597226363162No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC357270.18146374762992915No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT291830.14822561499941844No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG288630.14660027844046924No Hit
TGATGAAGGTTGGTGAGGCCAACCCAAAGCTGCAGAAAGTACTTGATGCC274400.13937260992989212No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG245150.12451601794574729No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCTCACTTCCACTATGTCC235350.11953842473396542No Hit
ACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCT203740.10348314703759556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)