FastQCFastQC Report
Tue 27 Sep 2022
EGAF00004455782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25767555
Sequences flagged as poor quality0
Sequence length50-120
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1589230.6167562269683717No Hit
ACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAA1366550.5303374728413309No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC1348400.523293731205774No Hit
CTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAG1246700.48382549295034005No Hit
GGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAAC878000.34073857608919433No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA808060.31359591548363824No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG669800.2599392918730551No Hit
GGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAG565340.2193999391870901No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC490830.19048373041214037No Hit
TCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGA475270.18444512876755284No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC420600.16322852517439082No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA392080.152160342725571No Hit
CACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAA327920.1272608130651123No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC317870.12336055943220067No Hit
TCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC295110.11452774622970631No Hit
CATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCC281390.1092032208721394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)