FastQCFastQC Report
Thu 9 May 2024
EGAF00004455783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25767555
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length50-120
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAA1416370.5496718644822918No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1340380.5201812899982168No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC1252740.486169525979473No Hit
CTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAG1124050.4362268752312744No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA783480.3040567876928952No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG736460.28580903388000917No Hit
GGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAAC647050.25111035951994665No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC499600.19388723532364635No Hit
TCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGA447400.1736292015288218No Hit
GGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAG426030.1653358263909789No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC408690.1586064335556866No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG340980.13232920236320442No Hit
CACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAA328350.1274276895887095No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC321950.12494394598168122No Hit
TCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC281670.10931188465494689No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA281260.10915276983012165No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)