FastQCFastQC Report
Sun 2 Apr 2023
EGAF00004455783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25767555
Sequences flagged as poor quality0
Sequence length50-120
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAA1416340.5496602219341338No Hit
CAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAA1340270.520138600654971No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC1252690.4861501217325431No Hit
CTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAG1124000.4362074709843445No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA783390.30402186004842136No Hit
CCTAGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAG736400.2857857487836933No Hit
GGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAAC647040.25110647867056074No Hit
TACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACC499590.19388335447426036No Hit
TCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGA447370.17361755898066386No Hit
GGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAG426030.1653358263909789No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC408670.15859867185691465No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG340980.13232920236320442No Hit
CACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAA328350.1274276895887095No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC321940.12494006513229525No Hit
TCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGC281670.10931188465494689No Hit
GCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGA281260.10915276983012165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)