FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004455785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2235049
Sequences flagged as poor quality0
Sequence length50-120
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACA207400.9279438616334587No Hit
CAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACAA76880.3439745616315347No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA65340.29234258398809154No Hit
GTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAA58840.26326044753381245No Hit
GGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAA47430.21221011261945485No Hit
CGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAA38630.17283737403520014No Hit
AGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTC33850.1514508183042072No Hit
TGTAATCCGTCTCCACAGACAAGGCCAGGACTCGTTTGTACCCGTTGATG30870.13811777728363003No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC28760.12867726837308713No Hit
GGAATATCCTTCTCTCCTTTTTTTACAATAACCAAGTTGAGAACGCTCAG27150.12147384688210416No Hit
CATGCTTAGTCAGTCTTTACATTCGCTTGCCAGCTGCGGACGGACACGCC26580.11892356722380583No Hit
GGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGCA26150.1169996720429843No Hit
TATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGC25850.11565741959124834No Hit
TGCCCTCAGGTTCGGAATAACAGCGAGAAATTGCTGCTAATACCGGATGA24920.11149643699086688No Hit
GCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTA24690.1104673767778693No Hit
CCAGCGAGCCGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGAT24060.10764864662922378No Hit
TGCCGAAAAGAGAGGCAAACGCCAGGTGCTTATTAGGCCGTGCTCCAAAG23990.1073354543904854No Hit
TTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCT22860.10227963682227996No Hit
CCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCC22850.10223489507388875No Hit
ACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGAT22580.1010268678673264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)