FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004455791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16640374
Sequences flagged as poor quality0
Sequence length50-120
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCT926190.5565920573660182No Hit
GCTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCT676630.4066194666057386No Hit
AGCCCTGGACTCCAAGGCCTTTCCACTTGGTGATCAGCACTGAGCACAGA640390.3848411099413992No Hit
GTCTCAGAGAGGAGCCTTAGCCCTGGACTCCAAGGCCTTTCCACTTGGTG452640.2720131170128748No Hit
CCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTG394200.23689371404753282No Hit
GGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTG290580.17462347901555578No Hit
GCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGG290290.17444920408639855No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC269220.1617872290610776No Hit
CGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACC263650.1584399485251954No Hit
ACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAG240960.1448044376887202No Hit
CTACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTT237290.14259895841283374No Hit
TACAACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTC209730.12603683066258006No Hit
ACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCG194480.11687237318103547No Hit
GGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTC193080.1160310459368281No Hit
CAAGATGGTGTTGCAGACCCAGGTCTTCATTTCTCTGTTGCTCTGGATCT189190.11369335809399475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG187640.11276188864505088No Hit
ACAGGCAGGCAGGGGCAGCAAGATGGTGTTGCAGACCCAGGTCTTCATTT170690.10257581950982593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)