FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004455916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004455916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17718216
Sequences flagged as poor quality0
Sequence length75
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1231000.6947652066099658No Hit
CCGGTCGCGGCGCACCGCCGCGGTGGAAATGCGCCCGGCGGCGGCCGGTCGCCGGTCGGGGGACGGTCCCCCGCC463880.2618096539741924No Hit
CGACGGGAGAGAGAGCGCGCGGCCGACGGCGCCCCCGGGCCGCCCCGCCGGAGCGGGACGACCGGAGGGAGGGGC262580.14819776437989016No Hit
AGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACGGGCGAGGGCCGGGGACCGCGAGGGCAAGGGCACC253350.14298843630758312No Hit
CGACGGGAGAGAGAGCGCGCGGCCGACGGCACCCCCGCGCCGCCCCGCCGGAGCGGGACGACCGGAGGGAGGGGC235370.13284068779836525No Hit
GGAAGGGGCGGGCGCGGCGGCAAGAGGAGGGCGGACGCCGCCGGGTCTGCGCTTAGGGGGACGGAGGGCCCCCGG199670.11269193241576916No Hit
GGACGGGCGGGGCCTCGGAGGAGGGGCGGCGGGGAGGAGGAGGGGCGCGGGAGCGGCGGTCGGCCGGACGCCGGG180080.10163551454615972No Hit
GCCGGTCGCGGCGCACCGCCGCGGTGGAAATGCGCCCGGCGGCGGCCGGTCGCCGGTCGGGGGACGGTCCCCCGC179050.10105419191187195No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)